Read experimental design from CSV or Excel — cr_read_design • cellreportR

Read experimental design from CSV or Excel

Usage

cr_read_design(path)

Arguments

path: Path to file. .csv, .tsv and .xlsx are supported.

Value

A tibble of design information.

See also

cr_design() to turn the table into a validated design object.

Other import: cr_assign_units(), cr_centroid_overlap(), cr_column_map(), cr_extract_markers(), cr_filename_grammar(), cr_marker_rules(), cr_merge_rules(), cr_parse_paths(), cr_path_spec(), cr_read_cellprofiler(), cr_read_cells(), cr_read_export(), cr_read_exports(), cr_read_qupath(), cr_read_segmantr(), cr_unit_map()

Examples

f <- tempfile(fileext = ".csv")
utils::write.csv(
  data.frame(well = c("A01", "A02"), treatment = c("Vehicle", "CompoundA")),
  f, row.names = FALSE
)
cr_read_design(f)
#> # A tibble: 2 × 2
#>   well  treatment
#>   <chr> <chr>    
#> 1 A01   Vehicle  
#> 2 A02   CompoundA