List the available cellspec readers

Lists the adapters implemented by this build of cellspecR. The generic table adapter accepts delimited files when the source columns are mapped explicitly with cs_column_map().

Usage

cs_formats()

Value

A data frame with format, adapter_version, description, tested_with and status columns.

See also

cs_detect_format(), cs_column_map(), cs_read()

Other adapters: cs_column_map(), cs_detect_format(), cs_read()

Examples

cs_formats()
#>         format adapter_version
#> 1        table           1.0.0
#> 2       qupath           1.0.1
#> 3 qupath_tiled           1.0.1
#> 4      mcquant           1.0.0
#> 5     segmantr           1.0.1
#> 6       inform           1.0.0
#>                                            description
#> 1 Generic delimited table with an explicit column map.
#> 2            QuPath colon-delimited measurement export
#> 3          Tiled QuPath tables with centroid ownership
#> 4                   MCMICRO MCQuant measurement export
#> 5                               segmantR feature table
#> 6                        inForm cell segmentation data
#>                                    tested_with       status
#> 1 CSV, TSV and gzip-compressed delimited files       stable
#> 2                       QuPath 0.6.0 and 0.7.0 experimental
#> 3                                 QuPath 0.7.0 experimental
#> 4                              MCMICRO/MCQuant experimental
#> 5                               segmantR 0.2.0 experimental
#> 6                              inForm/phenoptr experimental