Batch Convert DICOM to NIfTI — convert_batch • scimagR

Iterates over a registry and converts all sessions from DICOM to NIfTI.

Usage

convert_batch(
  registry,
  dicom_root,
  nifti_root,
  compress = TRUE,
  verbose = TRUE
)

Arguments

registry: Data frame with pat_id and session columns.
dicom_root: Character. Root DICOM directory.
nifti_root: Character. Root NIfTI output directory.
compress: Logical. Gzip output. Default TRUE.
verbose: Logical. Print progress. Default TRUE.

Value

Tibble with columns: pat_id, session, status, n_files.

Examples

if (FALSE) { # \dontrun{
convert_batch(registry, "data/raw/dicom", "data/nifti")
} # }