Generate SCT Quality Control Report — sct_generate_qc • scimagR

Creates an HTML QC report overlaying a segmentation on the original image.

Usage

sct_generate_qc(
  input,
  segmentation,
  qc_dir,
  process = "sct_deepseg",
  verbose = TRUE
)

Arguments

input: Character. Path to original NIfTI image.
segmentation: Character. Path to segmentation overlay.
qc_dir: Character. Directory for QC HTML output.
process: Character. SCT process name for labeling. Default "sct_deepseg".
verbose: Logical. Print progress. Default TRUE.

Value

Exit code (invisible).

Examples

if (FALSE) { # \dontrun{
sct_generate_qc("sub-01_T2w.nii.gz", "sub-01_T2w_seg.nii.gz", "qc/")
} # }