Extract Morphometric Parameters — sct_process_segmentation • scimagR

Runs sct_process_segmentation to compute cross-sectional area (CSA), AP diameter, and transverse diameter per vertebral level.

Usage

sct_process_segmentation(
  sc_seg,
  vert_labels,
  output_dir = NULL,
  perslice = FALSE,
  verbose = TRUE
)

Arguments

sc_seg: Character. Path to spinal cord segmentation NIfTI.
vert_labels: Character. Path to vertebral labels NIfTI.
output_dir: Character. Directory for CSV output.
perslice: Logical. Compute per-slice metrics. Default FALSE.
verbose: Logical. Print progress. Default TRUE.

Value

Character. Path to output CSV, or NA on failure.

Examples

if (FALSE) { # \dontrun{
sct_process_segmentation("sub-01_seg.nii.gz", "sub-01_labels-disc.nii.gz")
} # }