bambamR: End-to-End RNA-Seq Processing from FASTQ to Publication-Ready Plots

A streamlined toolkit for RNA-seq analysis covering FASTQ/BAM import, quality control, alignment, read counting, normalization, differential expression analysis, and publication-ready visualizations including onco plots, volcano plots, heatmaps, and PCA. Operates in minimal mode with CRAN-only dependencies or in full mode when Bioconductor packages are available.

See also

Useful links:

• https://r-heller.github.io/bambamR/

• https://github.com/r-heller/bambamR

• Report bugs at https://github.com/r-heller/bambamR/issues

Author

Maintainer: Raban Heller raban.heller@uni-ulm.de (ORCID)

Authors:

• Hanno Witte

• Konrad Steinestel