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Count Reads in BAM File

Source: R/import_bam.R
bb_count_bam.Rd

Returns the total number of reads in a BAM file using Rsamtools or system samtools.

Usage

bb_count_bam(path)

Arguments

path

Character. Path to a BAM file.

Value

An integer: total number of reads.

Examples

# \donttest{
# count <- bb_count_bam("aligned.bam")
# }