Filter cells in a cr_experiment — cr_filter

A thin wrapper around dplyr::filter() applied to the cells slot. Filtering is additive: rows excluded here are removed from the returned experiment and logged in qc_log.

Usage

cr_filter_cells(experiment, ...)

Arguments

experiment: A cr_experiment.
...: Filtering expressions passed on to dplyr::filter().

Value

A modified cr_experiment.

Examples

exp <- cr_example_experiment(seed = 1, n_cells_per_well = 10)
cr_filter_cells(exp, area > 50)
#> ── cr_experiment ───────────────────────────────────────────────────────────────
#> • Cells: 1026 across 96 wells
#> • Channels: "DAPI", "marker_1", "marker_2", and "marker_3"
#> • Design: 6 treatment groups
#> • QC steps applied: 1
#> ℹ Metadata fields: project and sop