Create a new molpath_parsed object — new_molpath

Constructs a molpath_parsed object representing the result of parsing a single data source. This serves as an intermediate representation before data is integrated into a molpath_db.

Usage

new_molpath_parsed(
  data = tibble::tibble(),
  source_type = character(1L),
  source_file = character(1L),
  parse_date = Sys.time()
)

Arguments

data: A tibble (or data frame) containing the parsed data.
source_type: A character string identifying the source type (e.g., "vcf", "xml_report", "pdf_report", "excel", "csv").
source_file: A character string with the path to the source file.
parse_date: A POSIXct timestamp of when the data was parsed. Defaults to the current time.

Value

An S3 object of class molpath_parsed.

Examples

parsed <- new_molpath_parsed(
  data = tibble::tibble(gene = "BRAF", variant = "V600E"),
  source_type = "vcf",
  source_file = "sample1.vcf"
)
parsed
#> 
#> ── molpath_parsed ──────────────────────────────────────────────────────────────
#> ℹ Source type: "vcf"
#> ℹ Source file: sample1.vcf
#> ℹ Parsed: "2026-04-17 17:35:49"
#> ℹ Data: 1 row x 2 columns
#> ℹ Columns: gene and variant
#> ℹ Completeness: "100%"