Summarise QC steps applied to an experiment
Value
A tibble with one row per QC step: step, parameters,
cells_before, cells_after, cells_removed,
percent_removed and timestamp.
See also
cr_qc_report() for a per-unit rather than per-step view.
Other quality control:
cr_apply_gate(),
cr_balance_cells(),
cr_exclude_small(),
cr_qc_doublets(),
cr_qc_filter(),
cr_qc_gate(),
cr_qc_gate_impact(),
cr_qc_intensity(),
cr_qc_manual(),
cr_qc_report(),
print.cr_qc_gate()
Examples
exp <- cr_example_experiment(seed = 1, n_cells_per_well = 30)
exp <- cr_qc_filter(exp, min_area = 50)
cr_qc_summary(exp)
#> # A tibble: 1 × 7
#> step parameters cells_before cells_after cells_removed percent_removed
#> <chr> <chr> <int> <int> <int> <dbl>
#> 1 cr_qc_filter min_area=… 2911 2754 157 5.39
#> # ℹ 1 more variable: timestamp <dttm>