Print a QC gate
Usage
# S3 method for class 'cr_qc_gate'
print(x, ...)Arguments
- x
A
cr_qc_gatefromcr_qc_gate().- ...
Ignored.
See also
Other quality control:
cr_apply_gate(),
cr_balance_cells(),
cr_exclude_small(),
cr_qc_doublets(),
cr_qc_filter(),
cr_qc_gate(),
cr_qc_gate_impact(),
cr_qc_intensity(),
cr_qc_manual(),
cr_qc_report(),
cr_qc_summary()
Examples
exp <- cr_example_experiment(seed = 1, n_cells_per_well = 30)
gate <- cr_qc_gate(exp, "marker_1", "Untreated", batch_vars = "replicate")
print(gate)
#>
#> ── QC gate ─────────────────────────────────────────────────────────────────────
#> Signal marker_1 vs "Untreated" of the same batch
#> Rule: unit median must be greater than the control median
#> • 96 units, 80 gated
#> • 5 fail vs the control median
#> • 16 fail vs the control mean
#> • 5 excluded under the chosen rule
#> ! 11 verdicts depend on which control centre is used.