Add parsed data to an existing molpath_db

Appends new data from one or more molpath_parsed objects to an existing molpath_db database. Records are deduplicated after appending.

Usage

mp_add_data(db, parsed)

Arguments

db

A molpath_db object to update.

parsed

A single molpath_parsed object or a list of molpath_parsed objects to add.

Value

An updated molpath_db object with the new data merged in.

Examples

# \donttest{
db <- mp_example_db(n_patients = 5, seed = 1)
new_data <- new_molpath_parsed(
  data = tibble::tibble(patient_id = "P99", os_months = 12,
    os_status = 1L, pfs_months = 6, pfs_status = 1L),
  source_type = "survival", source_file = "new.csv"
)
db <- mp_add_data(db, new_data)
#> 
#> ── Adding data to molpath database ──
#> 
#> ℹ Processing 1 parsed object.
#> ✔ Data added successfully.
#> ℹ Updated tables: 5 patients, 11 samples, 2011 variants, 11 reports, 20 clinical records, 6 survival records.
# }