References — Dimensionality reduction

Foundational and current literature on dimensionality reduction methods relevant to CTIR’s songR and adjacent packages: SONG, UMAP, t-SNE, PHATE, PCA.

Suggested reading

  • SONG — Tang et al. The primary method paper for the technique implemented in songR.
  • UMAP — McInnes, Healy, Melville.
  • t-SNE — van der Maaten and Hinton.
  • PHATE — Moon et al.
  • Foundational PCA references in the multivariate-analysis context.

See the disclaimer — this is a starting list, not a curated bibliography.

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