References — RNA-seq & bulk omics

Foundational literature underpinning CTIR’s bambamR and adjacent bulk-omics work.

Suggested reading

  • DESeq2 — Love, Huber, Anders, 2014.
  • edgeR — Robinson, McCarthy, Smyth, 2010.
  • limma-voom — Law, Chen, Shi, Smyth, 2014.
  • STAR aligner — Dobin et al., 2013.
  • salmon — Patro et al., 2017.
  • tximport — Soneson, Love, Robinson, 2015.

See the disclaimer — this is a starting list, not a curated bibliography.

Back to top