References — Single cell & cell reports

Literature underpinning CTIR’s cellreportR and adjacent single-cell methods.

Suggested reading

  • Seurat — Hao et al., current edition.
  • SingleCellExperiment and the Bioconductor single-cell stack — Amezquita et al., 2020.
  • scran normalisation — Lun, McCarthy, Marioni, 2016.
  • scater QC — McCarthy, Campbell, Lun, Wills, 2017.
  • Orchestrating Single-Cell Analysis with Bioconductor (OSCA) — online book.

See the disclaimer — this is a starting list, not a curated bibliography.

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