Generate a structured analysis report — cr

Renders an R Markdown report template bundled with the package. The report includes experimental setup, QC log, normalization notes, a comparison summary, per-comparison detail plots, optional dose-response fits, and a session info appendix.

Usage

cr_report(
  experiment,
  results,
  template = NULL,
  output_dir = tempdir(),
  format = c("html", "pdf"),
  title = "cellreportR analysis report",
  author = ""
)

Arguments

experiment: A cr_experiment.
results: List of cr_result objects produced by cr_test(), cr_test_all() or cr_logistic().
template: Path to an R Markdown template. If NULL, the bundled template is used.
output_dir: Output directory (default tempdir()).
format: One of "html" or "pdf".
title: Report title.
author: Author name for the report header.

Value

Path to the rendered report (invisibly).

Examples

if (FALSE) { # \dontrun{
# Requires a working pandoc installation.
exp <- cr_example_experiment(seed = 1, n_cells_per_well = 30)
res <- cr_test_all(exp, "marker_1", "Untreated", level = "replicate")
out <- cr_report(exp, res)
out
} # }