Export plots to PNG, PDF or SVG in batch — cr_export_plots • cellreportR

Export plots to PNG, PDF or SVG in batch

Usage

cr_export_plots(
  plots,
  path,
  format = c("png", "pdf", "svg"),
  width = 6,
  height = 4,
  dpi = 300,
  ...
)

Arguments

plots: A named list of ggplot2 objects. Unnamed elements are numbered.
path: Output directory, created when needed.
format: "png", "pdf" or "svg".
width, height: Figure dimensions in inches.
dpi: Resolution for raster outputs.
...: Further arguments passed to ggplot2::ggsave().

Value

A character vector of written file paths (invisibly).

See also

cr_export_tables().

Other reporting: cr_export_results(), cr_export_tables(), cr_render_report(), cr_report(), cr_table_qc(), cr_tables()

Examples

exp <- cr_example_experiment(seed = 1, n_cells_per_well = 20)
p1 <- cr_plot_intensity(exp, "marker_1")
out <- tempfile("plots_")
cr_export_plots(list(intensity = p1), out, width = 4, height = 3)