Collect the tables of an analysis

Gathers every tabular artifact of an experiment or report into one named list, ready for cr_export_tables(). Empty tables are dropped, so the result reflects what actually exists.

Usage

cr_tables(x, results = NULL, which = NULL)

Arguments

x

A cr_report or a cr_experiment.

results

Optional results to summarize when x is a cr_experiment. Ignored for a cr_report, which carries its own.

which

Optional character vector selecting a subset of tables by name. Unknown names are an error that lists what is available.

Value

A named list of tibbles.

See also

cr_export_tables(), cr_table_disposition(), cr_table_qc().

Other reporting: cr_export_plots(), cr_export_results(), cr_export_tables(), cr_render_report(), cr_report(), cr_table_qc()

Examples

exp <- cr_example_experiment(seed = 1, n_cells_per_well = 20)
tabs <- cr_tables(exp)
names(tabs)
#> [1] "disposition" "design"      "channels"   
tabs$disposition
#> # A tibble: 7 × 4
#>   treatment      n_units n_cells median_cells_per_unit
#>   <chr>            <int>   <int>                 <dbl>
#> 1 CompoundA_high      16     324                  20.5
#> 2 CompoundA_low       16     341                  21  
#> 3 CompoundB           16     350                  23  
#> 4 CompoundC           16     335                  20  
#> 5 PosControl          16     303                  19  
#> 6 Untreated           16     308                  19  
#> 7 (total)             96    1961                  20