Intensity distributions by group — cr_plot_intensity • cellreportR

Intensity distributions by group

Usage

cr_plot_intensity(
  experiment,
  channel,
  group_by = "treatment",
  geom = c("violin", "boxplot", "both"),
  log_y = TRUE
)

Arguments

experiment: A cr_experiment.
channel: Channel name.
group_by: Design column to colour / facet on. Default "treatment".
geom: "violin", "boxplot" or "both".
log_y: Log-transform the y-axis (default TRUE).

Value

A ggplot object.

See also

cr_plot_screen() to overlay the unit of replication.

Other visualisation: cr_plot_comparison(), cr_plot_dose_response(), cr_plot_effect_sizes(), cr_plot_foldchange(), cr_plot_heatmap(), cr_plot_histogram(), cr_plot_plate(), cr_plot_qc(), cr_plot_roc(), cr_plot_scatter(), cr_plot_spatial(), cr_plot_timeline()

Examples

exp <- cr_example_experiment(seed = 1, n_cells_per_well = 30)
cr_plot_intensity(exp, channel = "marker_1")