Heatmap of channel medians across groups — cr_plot_heatmap • cellreportR

Heatmap of channel medians across groups

Usage

cr_plot_heatmap(
  experiment,
  channels,
  group_by = "treatment",
  scale = c("none", "row", "column")
)

Arguments

experiment: A cr_experiment.
channels: Character vector of channel names.
group_by: Design column defining rows. Default "treatment".
scale: One of "none", "row", "column".

Value

A ggplot2 object.

Examples

exp <- cr_example_experiment(seed = 1, n_cells_per_well = 30)
cr_plot_heatmap(exp, c("DAPI", "marker_1", "marker_2"))