Plate-layout heatmap — cr_plot_plate • cellreportR

Draws a plate-layout heatmap for a 96 or 384-well plate, showing a summary metric (median intensity, cell count, etc.) per well.

Usage

cr_plot_plate(
  experiment,
  channel,
  metric = c("median", "mean", "cv", "n_cells")
)

Arguments

experiment: A cr_experiment.
channel: Channel name for the metric computation.
metric: One of "median", "mean", "cv", "n_cells".

Value

A ggplot object.

See also

cr_theme(), cr_palette()

Other visualisation: cr_plot_comparison(), cr_plot_dose_response(), cr_plot_effect_sizes(), cr_plot_foldchange(), cr_plot_heatmap(), cr_plot_histogram(), cr_plot_intensity(), cr_plot_qc(), cr_plot_roc(), cr_plot_scatter(), cr_plot_spatial(), cr_plot_timeline()

Examples

exp <- cr_example_experiment(seed = 1, n_cells_per_well = 30)
cr_plot_plate(exp, channel = "marker_1", metric = "median")