Plate-layout heatmap

Draws a plate-layout heatmap for a 96 or 384-well plate, showing a summary metric (median intensity, cell count, etc.) per well.

Usage

cr_plot_plate(
  experiment,
  channel,
  metric = c("median", "mean", "cv", "n_cells")
)

Arguments

experiment

A cr_experiment.

channel

Channel name for the metric computation.

metric

One of "median", "mean", "cv", "n_cells".

Value

A ggplot2 object.

Examples

exp <- cr_example_experiment(seed = 1, n_cells_per_well = 30)
cr_plot_plate(exp, channel = "marker_1", metric = "median")