Biaxial scatter plot of two channels — cr_plot_scatter • cellreportR

Biaxial scatter plot of two channels

Usage

cr_plot_scatter(
  experiment,
  channel_x,
  channel_y,
  color_by = "treatment",
  log_x = TRUE,
  log_y = TRUE
)

Arguments

experiment: A cr_experiment.
channel_x: X-axis channel.
channel_y: Y-axis channel.
color_by: Design column used for colour. Default "treatment".
log_x, log_y: Log-transform the respective axis.

Value

A ggplot object.

See also

Other visualisation: cr_plot_comparison(), cr_plot_dose_response(), cr_plot_effect_sizes(), cr_plot_foldchange(), cr_plot_heatmap(), cr_plot_histogram(), cr_plot_intensity(), cr_plot_plate(), cr_plot_qc(), cr_plot_roc(), cr_plot_spatial(), cr_plot_timeline()

Examples

exp <- cr_example_experiment(seed = 1, n_cells_per_well = 30)
cr_plot_scatter(exp, "DAPI", "marker_1")