QC dashboard — cr_plot_qc • cellreportR

Combines cell count per well, area distributions and intensity distributions into a single multi-panel figure.

Usage

cr_plot_qc(experiment, channel = NULL)

Arguments

experiment: A cr_experiment.
channel: Channel name used for the intensity panel.

Value

A ggplot object (facetted).

See also

cr_plot_qc_gate() for the gate against each unit's own control.

Other visualisation: cr_plot_comparison(), cr_plot_dose_response(), cr_plot_effect_sizes(), cr_plot_foldchange(), cr_plot_heatmap(), cr_plot_histogram(), cr_plot_intensity(), cr_plot_plate(), cr_plot_roc(), cr_plot_scatter(), cr_plot_spatial(), cr_plot_timeline()

Examples

exp <- cr_example_experiment(seed = 1, n_cells_per_well = 30)
cr_plot_qc(exp, channel = "marker_1")