Changelog

Source: NEWS.md

phenoscapR 0.1.0

• Initial release.
• Read single-cell spatial biology data with read_spatial().
• Quality control with qc_filter().
• Marker normalisation with normalise_markers().
• Cell phenotyping with phenotype_cells() and summarise_phenotypes().
• Spatial analysis: nearest_neighbours(), cell_density(), interaction_matrix(), spatial_clusters().
• Visualisation: plot_cell_map(), plot_density(), plot_heatmap(), plot_interactions().